Lab Science News

Nuisance odors are a complex and subjective issue, often resulting in odor complaints directed at industrial or agricultural facilities such as wastewater treatment plants, landfills, large scale composting facilities, or animal feed operations. At these types of facilities, most odorous chemical compounds are produced under anaerobic conditions. Contrary to popular belief, nuisance odors themselves do not generally cause long term illness or any direct health effect.  In other words, if the source of the odor is taken away, any associated illness symptoms (e.g. nausea) will also go away. Therefore, unlike investigations centered on human health risk, investigations involving nuisance odor are governed by the perception of the receptor. A person’s perception of odor is related to the human olfactory system, which can vary widely from person to person; what smells bad to one person might not have an odor at all to someone else. To further confuse the issue, there is a distinct lack of odor regulations, and those that exist are extremely vague. The EPA defaults to the state level for nuisance odors, and most states defer to the county or local level.

Odor is a parameter which may be measured unto itself, following established ASTM and/or European Standards. This approach will quantify how odorous a sample is, ranking it on a relative scale with units of dilution to threshold (D/T).

Knowing the magnitude of an odor problem is useful, but often more detailed chemical information is necessary when odor control engineering solutions are being evaluated.  When a detailed chemical analysis of odorous compounds is needed, there are several analytical options:

1. Produced during the acidogenesis stage of anaerobic digestion, reduced sulfur compounds have a very characteristic odor of rotten eggs, rotten garlic/cabbage, skunk or natural gas. In fact, the human nose is sometimes more sensitive than the most current analytical instrumentation used to detect these compounds. An example of these compounds is methyl mercaptan, which has an extremely low odor threshold (this is why mercaptans are used as natural gas odorants). The most popular analytical option for reduced sulfur compounds is ASTM Method D5504. This method quantifies a list of 20 speciated reduced sulfur compounds (such as hydrogen sulfide, mercaptans, thiophenes) using gas chromatography with a sulfur chemiluminescence detector (GC/SCD).

2. With a characteristic fishy/fertilizer or putrid/sour/pungent odor, amines are the result of the biological breakdown of amino acids and are produced at various stages of anaerobic digestion. Columbia Analytical has developed a comprehensive amine sampling and analytical method that reports a list of 13 amine compounds with reporting limits at or below published odor threshold concentrations. A sample is collected on an in-house designed sorbent tube using a personal sampling pump. Due to their unique chemical characteristics, amines will not always be detected in any of the other tests described here (e.g. VOC test). Analysis of the samples is via a specially modified gas chromatography with nitrogen phosphorous detection (GC/NPD).

3. Ammonia, which is produced by microbial decomposition of animal waste, has a characteristic odor most people will recognize due to the compound’s use in window cleaners. At higher concentrations, ammonia can cause serious health damage, irritating and/or burning nasal passages and lungs. Collection of airborne ammonia may follow the OSHA ID-188 method, which uses sulfuric acid-coated Anasorb-747 (carbon bead) tubes and a personal sampling pump for collection. This means of sample collection is much easier and safer than the traditional collection technique of sulfuric acid solution impingers. Analysis may follow the OSHA-ID 164 analysis, which utilizes an ion-specific electrode (ISE) to detect ammonia.

4. Carboxylic (volatile fatty) acids are produced as a result of the biological anaerobic breakdown of proteins, with typical odor characteristics including a rancid, fecal, vomitous, or sweaty gym sock smell. Columbia Analytical has developed a comprehensive sampling and analytical method that reports a list of 15 carboxylic acid compounds with reporting limits at or below published odor threshold concentrations. The sample is collected on a sodium hydroxide-treated silica gel tube using a personal sampling pump; the subsequent sample is then analyzed via gas chromatography/mass spectrometry (GC/MS).

5. Several other analytical methods may be used to quantify levels of aldehydes and other miscellaneous volatile organic compounds (VOCs). EPA Method TO-11A (silica gel tubes coated with acidified 2,4-dinitrophenylhydrazine (DNPH) ) is an appropriate method for sampling of aldehydes (carbonyl compounds).  EPA Methods TO-15 (stainless steel canisters) and TO-17 (thermal desorption tubes) are appropriate methods for sampling of volatile organic compounds.  Polar volatile compounds such as alcohols, aldehydes, esters, ketones, ethers, phenols and cresols are often contributors to nuisance odors.

Due to their complex nature, there is no “one size fits all” approach for evaluating the chemical composition of odors. Odorous compounds may have additive, synergistic or antagonistic effects, all contributing to odor perception. Multiple analytical methods or evaluation approaches may be required to address a single source.

Chlorine has been used to disinfect water for almost a century due to its ability to kill bacteria and viruses in water. The use of chlorine as a disinfectant has been an effective contribution to public health eliminating plagues such as cholera and typhoid, and reducing the incidence of intestinal illness and other health problems caused by waterborne pathogens such as cryptosporidium. The benefits of disinfection, however, do not come without an effect.

Depending on the disinfection procedure used, (chlorination, chloramines, bromine, ozone etc.), and the chemical composition of the water prior to disinfection; many different organic chemical disinfection byproducts can form in drinking water. Trihalomethanes, (THMs), are a byproduct of chlorine disinfection and to a lesser degree, disinfection using chloroamines. The THMs, (chloroform, bromodichloromethane, dibromochloromethane, and bromoform) are formed when free chlorine combines with organic matter, like decaying vegetation commonly found in lakes and reservoirs. Total Trihalomethanes (TTHM) are regulated by the EPA at a maximum allowable annual average of 80 parts per billion. Some of the THMs are very volatile and will vaporize into air easily, so they may be inhaled while showering, however, the EPA has determined that this exposure is minimal compared to that from consumption. The Levels of THMs formed can vary widely on a number of factors including temperature, amount of chlorine used, season, and amount of plant material in the water, among others.

Some drinking water systems use chloroamines as a residual disinfection agent in place of chlorine. Chloroamine is not as reactive as chlorine and less THMs are formed. However, there are also drawbacks to chloroamine use. Chloroamine may cause nitrification and corrosion and may also increase exposure to other disinfection byproducts, such as N-nitrosodimethyl amine (NDMA).

EPA Method 524.2 is used to analyze samples for TTHMs. This method involves concentrating the THMs from a water sample using a technique known as purge and trap. This technique isolates the volatile organic compounds (VOCs) from the water. The VOCs are then desorbed into a gas chromatograph/mass spectrometer (GC/MS) where they are separated, their identity is confirmed, and their concentrations are determined. Standard reporting limits for individual TTH with this method are 0.5 µ/L

In the early 2000s, the EPA began to investigate the synthetic compound Perfluorooctanoic Acid (PFOA or C8) and its salts, primarily Ammonium Perfluorooctanate (APFO) and other fluoropolymers that may metabolize or degrade into PFOA. These compounds are of interest because of their similarity to another compound known as Perfluorooctyl Sulfonate (PFOS). PFOS was designated a persistent organic pollutant and the primary worldwide manufacturer ceased making it in 2001.

There is still controversy over PFOA’s toxicity, though the compound is persistent (doesn’t biodegrade, hydrolyse or photolyse), bioaccumulates in human and animal tissue (binds to proteins in the blood and liver), and biomagnifies up the food chain. In 2007, the Center for Disease Control and Prevention published the results of two studies on the levels of 11 different polyfluorochemicals in humans. In those studies PFOS, PFOA and Perfluorohexane Sulfonic Acid (PFHS) were found in 98% of those tested, confirming widespread exposure to these compounds. Exposure may occur through consumption of contaminated food or water or through the use of products containing these compounds, but not all sources are known or understood.

PFOA is a polymerization aid used in the manufacturing of fluoropolymers. The carbon fluorine part of the molecule is water resistant, which makes them valuable in producing fluoropolymer products that can repel water, grease and oil. These compounds are used in making non-stick surfaces for cookware, stain resistant clothing, carpets and other fabrics and in fire fighting foams. It is because of its unique polar anionic chemical properties that traditional models used to predict chemical behavior of non-polar organic chemicals, like PCBs or dioxins, in wildlife and humans, cannot be extrapolated from standard experimental data on mice and rats. In rodents PFOA has been shown to be carcinogen and immunotoxic, but whether this can be translated into information about its effect on humans is not clear. Studies continue. It should be noted, in February 2006, the EPA’s Science Advisory Board voted to approve a recommendation that PFOA should be considered a likely carcinogen.

The principal fluoropolymer producers committed to a minimum 50-percent reduction in total global emissions by 2006 (using 2000 as the baseline year), 95% reduction in emissions and product content by 2010 and elimination of its use altogether by 2015. However, because of the persistence of these compounds in the environment and the bioaccumulation and biomagnification in the food chain these compounds will continue to be in the environment long after manufacturing ceases.

Perfluorinated compounds are large molecules and are not amenable to common analytical techniques such as Gas Chromatography/Mass Spectroscopy (GC/MS).

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Every day millions of gallons of treated and untreated wastewater are discharged into the waterways of the world. This wastewater may contain varying concentrations of pharmaceuticals and personal care products (PPCPs) including prescription and over the counter medications, nutraceuticals, illicit drugs, detergents, perfumes, insect repellent, sunscreens, and steroids, some of which have been identified in a recent article by The Associated Press¹.

Recent studies have shown that many of these PPCP compounds at low concentrations can have negative effects on the endocrine systems of aquatic organisms. These compounds are collectively known as Endocrine Disrupting Compounds (EDCs). Other concerns regarding PPCPs include contamination of drinking water, estrogenic effects on humans and wildlife, and development of antibiotic resistant bacteria.

In 1999 and 2000, a study was performed by the USGS (Koplin, et al, 2000²) in which the concentrations of 95 of these compounds were measured in 139 streams in 30 states (mostly downstream from intense urbanization and livestock production). Eighty-two of the 95 compounds of interest were found and 80% of the streams tested contained one or more of these compounds. Multiple compounds were found in many samples. The average number was seven and the greatest number was 38. Concentrations were low, rarely exceeding health advisories or aquatic-life criteria. However, advisory limits are not available for many of these compounds. Little is known about the effects of long-term low exposure to these compounds, potential interactions with other compounds in the environment (synergistic or antagonistic), possible cumulative effects over time, or what effect any degradation products of these compounds may have.

These compounds enter the environment from a wide variety of sources including agriculture use of pesticides and antibiotics, industrial discharges, and household use of chemicals and pharmaceuticals. Most wastewater treatment and domestic septic systems are not designed to remove these compounds. In another USGS study (Stackelberg et al., 2004³), between 11 and 17 of these compounds were found in all finished drinking water samples at a conventional water treatment plant.

Analytical testing for these compounds requires the use of sophisticated instrumentation and experienced chemists. Due to their chemical nature, many of these compounds are not amenable to standard environmental gas chromatographic (GC) techniques. They are generally larger, less volatile, and more polar than other organic compounds that can be analyzed via GC and GC/MS techniques. Some of these compounds are also thermally labile, breaking down at elevated GC temperatures. Since PPCPs include many different classes of compounds with varying physical and chemical properties, Liquid Chromatography/Mass Spectroscopy/Mass Spectroscopy (LC/MS/MS) provides a convenient approach for determining a relatively wide range of chemicals of interest.⁴

If you’ve had your laboratory run low-level polyaromatic hydrocarbons (PAHs) or other low level analyses, chances are you have heard of Gas Chromatography/Mass Spectroscopy- Selective Ion Monitoring (GC/MS-SIM). Over the years clients have asked us “What’s the difference between GC/MS-Full Scan and GC/ MS-SIM?” To address this question we must start with the basics. (For our example we will be talking about a standard quadrupole mass spectrometer using electron ionization.)

GC/MS is an instrumental analytical technique comprised of a gas chromatograph and a mass spectrometer. In general, the GC is used to separate complex chemical mixtures into individual components. Once separated, the chemicals can be identified and quantified by the mass spectrometer.

Before analysis can occur a sample must be prepared, usually by extracting the analytes of interest into a liquid solvent phase. This extract is then injected into the GC where it is swept onto a separation column by an inert carrier gas such as hydrogen or helium. The analytes in the mixture are carried through the column by the carrier gas where they are separated from one another by their interaction between the coating (stationary phase) on the inside wall of the column and the carrier gas. Each analyte interacts with the stationary phase at different rates. Those that react very little move through the column quickly and will exit into the mass spectrometer before those analytes having longer interaction and retention times.

When the individual analytes exit the GC column they enter the ionization area (ion source) of the MS. Here they are bombarded with electrons which form ionized fragments of the analyte. These ionized fragments are then accelerated into the quadrapole via a series of lenses and separated based on their mass to charge ratio. This separation is accomplished by applying alternating RF frequency and DC voltage to diagonally opposite ends of the quadrapole, which in turn allows a specific mass fragment to pass through the quadrapole filter. From here the fragments enter the mass detector (electron multiplier) and are recorded. The MS computer graphs a mass spectrum scan showing the abundance of each ionized mass fragment.

A GC/MS system in Full Scan mode will monitor a range of masses know as mass to charge ratio (abbreviated m/z). A typical mass scan range will cover from 35-500 m/z four times per second and will detect compound fragments within that range over a set time period. Laboratories have extensive computer libraries containing mass-spectra of many different compounds to compare to the unknown analyte spectrum. The Full Scan mode is quite useful when identifying unknown compounds in a sample and providing confirmation of results from GC using other types of detectors.

Operation of a GC/MS in SIM mode allows for detection of specific analytes with increased sensitivity relative to full scan mode. In SIM mode the MS gathers data for masses of interest rather than looking for all masses over a wide range. Because the instrument is set to look for only masses of interest it can be specific for a particular analyte of interest. Typically two to four ions are monitored per compound and the ratios of those ions will be unique to the analyte of interest. In order to increase sensitivity, the mass scan rate and dwell times (the time spent looking at each mass) are adjusted.

When properly setup and calibrated, GC/MS-SIM can increase sensitivity by a factor of 10 to 100 times that of GC/MS-Full Scan. Because unwanted ions are being filtered, the selectivity is greatly enhanced providing an additional tool to eliminate difficult matrix interferences.

The ability of the mass spectrometer to identify unknowns in the full scan mode and quantitiate know target analytes in the SIM mode, makes it one of the most powerful tools available for trace level quantitative analysis in the lab today.

Soil gas sampling is increasing in frequency across the country as vapor intrusion continues to gain regulatory attention. When evaluating the potential for vapor intrusion at a particular site, it is useful to collect soil gas samples to find out how vapors and contaminants of concern are migrating in the subsurface, and whether or not those vapors are migrating indoors. Soil gas sampling, used in conjunction with state specific screening criteria and/or modeling, is often an intermediate step between screening based on groundwater concentration and collecting indoor air samples.

The goal of soil gas sampling is to collect a sample of the vapor that resides in the interstitial soil pores near a source of contamination and/or near a potential receptor structure. To sample soil gas, a temporary or permanent soil vapor probe is installed. If the well is installed incorrectly or is not sealed properly, leaks to the ambient air may occur. This can dilute or otherwise influence the concentrations seen, potentially leading to incorrect decision making.

Using a tracer gas can give quantitative proof that the sampling system was installed and sealed correctly. The tracer compound is placed around the soil gas probe at the ground surface, so that if the well is installed correctly and everything is sealed properly, no tracer compound will be seen in the sample. The soil gas sample is then collected. If the tracer compound is detected in the soil gas sample, it is an indicator that some amount of leaking has taken place and the sample may be deemed unrepresentative or even invalid.

Several state vapor intrusion guidance documents make recommendations about which soil gas tracers to use, but most states leave room for professional judgment by the environmental professional to use other compounds. Each potential tracer compound has its benefits and its drawbacks from a sampling and analytical viewpoint.

Many professionals have successfully used helium as a tracer compound for soil gas surveys. As opposed to other tracers, such as isopropyl alcohol, helium will not interfere with the TO-15 analysis even if there is a small leak. Another unique benefit is that helium may be monitored and evaluated onsite so leaks can be proactively fixed in the field prior to sampling.

In addition to choosing an appropriate tracer compound, when collecting a representative and defensible soil gas sample, it is also important to follow thorough quality control and quality assurance practices, and to have several lines of evidence to support your conceptual site model.

Measuring the levels of oxygen, carbon dioxide, and methane present in the soil gas (indicators of biological activity) can also prove useful. Measurement of these indicator compounds can be done onsite with a multigas meter and/or at the analytical laboratory via EPA Method 3C modified (GC/TCD). Interpretation of the fixed gas data can provide a secondary line of evidence to support the conceptual site model. For instance, if the oxygen profile is decreasing with depth and suddenly a deeper soil gas sample shows an increased concentration (or near ambient levels) of oxygen, it is possible that a leak occurred, letting in ambient air.

It is important to note that leak testing of the sampling train can also be done with the use of a vacuum pump and a magnahelic gauge. Evacuate the sampling line, close off the soil gas point and the canister with a gauge in line, and observe whether the gauge needle returns to zero. If the needle moves back to zero, a leak is present somewhere in the system.

The field of vapor intrusion is constantly evolving, and accepted sampling procedures may change. Always check for any applicable state or Federal regulatory guidance prior to conducting sampling.